MuliModalSparsePLS(DA)

Source: R/multimodal-wrapper.R

MuliModalSparsePLS(DA)

multimodal_sPLS_wrapper(
  mae,
  study_assays,
  lineages = NULL,
  stages = NULL,
  ncomp = 2,
  scale = TRUE,
  design = "null",
  DA = NULL,
  keepX = NULL,
  save = TRUE
)

Arguments

mae

A MultiAssayExperiment object
study_assays

study assays. first must be 'rna' for unsupervised analysis
lineages

Character, lineages to keep, from unique(colData(mae)$lineage10x_2)
stages

Character, stages to keep, from unique(colData(mae)$stage)
ncomp

Integer, number of components
scale

Logical, whether to scale the features
DA

NULL for unsupervised, or from names(colData(mae)) for supervised (PLSDA)